The AbDb data set, a compilation of antibodies extracted from the PDB with standard numbering schemes applied and redundancy information.
Complex with Antigen Type | ||||
---|---|---|---|---|
Numbering | Protein | Non-protein | Free antibodies | Complete Dataset |
Kabat | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Chothia | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Martin | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Redundant Antibody List | Download | Download | Download | Download |
Free Antibody/Complex List | Free Antibodies/Complexes |
Complex with Antigen Type | ||||
---|---|---|---|---|
Numbering | Protein | Non-protein | Free antibodies | Complete Dataset |
Kabat | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Chothia | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Martin | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Redundant Antibody List | Download | Download | Download | Download |
Free Antibody/Complex List | Free Light/Complexed Light |
Complex with Antigen Type | ||||
---|---|---|---|---|
Numbering | Protein | Non-protein | Free antibodies | Complete Dataset |
Kabat | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Chothia | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Martin | All / NR | All / NR | All / NR | All / NR |
Individual | Individual | Individual | Individual | |
Redundant Antibody List | Download | Download | Download | Download |
Free Antibody/Complex List | Free Heavy/Complexed Heavy |
Datasets | Complex Type | Processed PDB Files | Resultant Antibodies | Non-Redundant Antibodies |
---|---|---|---|---|
Complete Antibody | Protein | 1694 | 3000 | 1205 |
Non-protein | 361 | 489 | 259 | |
Free Antibody | 915 | 1536 | 810 | |
Complete Dataset | 2894 | 5025 | 1924 | |
Light Chains | Protein | 9 | 14 | 6 |
Non-protein | 1 | 1 | 1 | |
Light Only | 97 | 236 | 61 | |
Complete Dataset | 107 | 251 | 66 | |
Heavy Chains | Protein | 246 | 466 | 190 |
Non-protein | 13 | 36 | 14 | |
Heavy Only | 102 | 198 | 102 | |
Complete Dataset | 347 | 700 | 277 |
The following statistics show the type and number of unprocessed antibody related structures that are not present in AbDb
Fc Fragments | Numbering Failed | Superseded | Single Chain Antibody (scFVs) |
---|---|---|---|
239 | 168 | 13 | 102 |
List of antibodies that failed the numbering
List of antibodies bound to multiple antigens
List of single chain antibodies (scFVs)
List of chain mapping information for all structures in AbDb